FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11662432
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC460286739.46747127871785No Hit
CATCACTT286208824.54109057184642No Hit
ACAATTCA255780621.932012122342922No Hit
GTGTGGAG124462010.672045076018449No Hit
TGCGCCGC746880.6404153096026626No Hit
ACAATTCC360190.30884638812899406No Hit
CATCCCTT297100.2547496096868989No Hit
CATCACTA141710.12150981887825799No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)