FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12941761
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC519474840.13942152076522No Hit
CATCACTT320546824.7684067106478No Hit
ACAATTCA285549522.06419203692604No Hit
GTGTGGAG138543510.705150558722263No Hit
TGCGCCGC548820.4240690273912492No Hit
ACAATTCC259310.20036685888419667No Hit
CATCCCTT181430.14018957698260692No Hit
CATCACTA150990.11666882119056286No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)