FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10383775
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC302808729.161716235184215No Hit
TCAGCCGT252109324.279156665085676No Hit
GGTCAATA248689623.94982556921736No Hit
ATCTTTAG194603118.741074416577785No Hit
CAGCGGCC1030900.9927988616856587No Hit
TCCGCCGT420290.4047564589949224No Hit
GGGCAATA184280.17746917667226034No Hit
GAGAGGCC153050.14739340942961496No Hit
TCAGCCGG122730.11819400940409437No Hit
GGTCAATT110450.10636786717739936No Hit
ATGTTTAG109490.10544334791537759No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)