FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9725397
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC282556429.0534566352407No Hit
TCAGCCGT236424724.310030737048574No Hit
GGTCAATA234106724.071685711133437No Hit
ATCTTTAG184150218.93498023782474No Hit
CAGCGGCC828480.8518726793363808No Hit
TCCGCCGT367300.3776709578025452No Hit
GGGCAATA136720.14058037939222431No Hit
GAGAGGCC128360.13198432927725212No Hit
TCAGCCGG109480.11257124002238676No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)