FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11908662
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC352656129.613410809711453No Hit
TCAGCCGT290726524.4130280966913No Hit
GGTCAATA288906024.260156178754592No Hit
ATCTTTAG224975518.89175291061246No Hit
CAGCGGCC730710.6135953812443413No Hit
TCCGCCGT304970.25609090257159034No Hit
GGGCAATA142230.1194340724423953No Hit
GAGAGGCC119500.10034712547891611No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)