FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11667466
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC344934329.563771602162802No Hit
TCAGCCGT284200324.358356818867097No Hit
GGTCAATA283145324.26793444266304No Hit
ATCTTTAG221053718.946161917249214No Hit
CAGCGGCC710680.6091125528028108No Hit
TCCGCCGT304920.2613420943330797No Hit
GGGCAATA135020.11572349985849541No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)