FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11193317
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC328341329.333690808542272No Hit
TCAGCCGT272513824.34611652649523No Hit
GGTCAATA271280524.235934709970245No Hit
ATCTTTAG211147218.863684464578284No Hit
CAGCGGCC785440.7017044188063288No Hit
TCCGCCGT347710.3106407153482743No Hit
GGGCAATA149430.13349930141351307No Hit
GAGAGGCC127840.11421100644250493No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)