FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11183857
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC328219729.347630249564173No Hit
TCAGCCGT272625524.376697591895173No Hit
GGTCAATA271625124.28724723501025No Hit
ATCTTTAG212119818.96660517029143No Hit
CAGCGGCC699300.6252762352022205No Hit
TCCGCCGT326490.2919296983142756No Hit
GGGCAATA134700.12044145414234105No Hit
GAGAGGCC117670.10521414928678005No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)