FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97576114
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGATAC3418994535.03925663610666No Hit
TTTACATG2345561924.038279491228764No Hit
GAATTCCA2141029921.942151744227075Illumina Small RNA Adapter 2 (100% over 8bp)
ACGCGGGT1603065416.42887110671368No Hit
CGCGCTAC1316650.13493568723181576No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)