FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46534736
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATTCC1424686830.61555565717618No Hit
TTGCCGGA1247928826.81714579835588No Hit
AGTTGCAG1011774221.742343182090902No Hit
CAAGAATT892718019.18390597509783No Hit
GCCCTTCC723410.15545591577010343No Hit
TTGCCGGC657410.14127296220182703No Hit
GCCATTCA485350.10429843203580225No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)