FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47431215
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATTCC1451697430.60637177436842No Hit
TTGCCGGA1270483726.785813941304266No Hit
AGTTGCAG1033102321.78106337777769No Hit
CAAGAATT908511319.154291113984744No Hit
GCCCTTCC784690.16543746560150316No Hit
TTGCCGGC680680.14350886857947873No Hit
GCCATTCA497590.1049077068761574No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)