FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45182611
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT1356282930.017807071840092No Hit
CCACTACA1150092825.454323567090885No Hit
ATGAAGAC992276921.961477613588997No Hit
GATTCTGG959267321.230895664706054No Hit
ATGAAGCC826240.18286681130490665No Hit
CCCCTACA610320.13507851505084556No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)