FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44858640
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT1345834030.001667460270752No Hit
CCACTACA1140653625.42773476859753No Hit
ATGAAGAC983330221.920642266461936No Hit
GATTCTGG952746821.23886947977023No Hit
ATGAAGCC908110.2024381479242349No Hit
CCCCTACA703720.15687501894841216No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)