FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45549007
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT1369235630.060712410261765No Hit
CCACTACA1158643925.437303166674962No Hit
ATGAAGAC999532421.944109560939495No Hit
GATTCTGG966100321.210128686230195No Hit
ATGAAGCC918500.20165093829597647No Hit
CCCCTACA653770.14353112022837294No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)