FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45236508
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT1357357530.00579752972975No Hit
CCACTACA1151453125.454066878902324No Hit
ATGAAGAC992152221.93255500623523No Hit
GATTCTGG962103721.268301700033966No Hit
ATGAAGCC830960.1836923398242853No Hit
CCCCTACA674490.1491030209493624No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)