FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39492058
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACGCGG1157739729.315760146002013No Hit
CCTTTGTC919129423.273778236626715No Hit
AGCACACT914831023.164936099303816No Hit
TAGGATAA805538220.397473335018397No Hit
AGCCCACT2003670.5073602393676218No Hit
AGCACCCT1448280.36672689987440005No Hit
GTGCGCGG1111960.2815654732402145No Hit
GTCCGCGG1082700.2741563886085653No Hit
CCGTTGTC508980.12888160956311773No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)