FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39024247
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACGCGG1137548429.149784747928642No Hit
CCTTTGTC912859323.39210542614698No Hit
AGCACACT908876223.290038113996154No Hit
TAGGATAA797615920.438982461339997No Hit
AGCCCACT1991770.5103929359610706No Hit
AGCACCCT1487180.38109127384315705No Hit
GTGCGCGG983660.25206380023168673No Hit
GTCCGCGG971960.24906566422665377No Hit
CCGTTGTC461010.11813424612651718No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)