FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37500791
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACGCGG1087680629.004204204652645No Hit
CCTTTGTC871028023.226923400095746No Hit
AGCACACT861757322.97970994798483No Hit
TAGGATAA764697020.391489875506892No Hit
AGCCCACT2311760.6164563302144747No Hit
AGCACCCT1623570.4329428677917754No Hit
GTCCGCGG1227110.32722243112151955No Hit
GTGCGCGG1018350.2715542720152223No Hit
CCGTTGTC551080.14695156696828074No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)