FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002538824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49854080
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGGGTG1376737527.615342615890214No Hit
AGCTATCA1226692224.60565313811828No Hit
GTGCCCGT1180456823.67823857144691No Hit
CATATAAC1016192620.38333873576646No Hit
CATATACC1636340.32822589445036393No Hit
GTGCCCGG1170020.23468891613284207No Hit
TCAGGGGG1103200.22128580048012117No Hit
GGGCCCGT877560.17602571344210946No Hit
AGCTATCC876330.17577899341438052No Hit
GCAGGGTG606350.12162495025482367No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)