FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002538830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50953476
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGGGTG1410127427.67480279461209No Hit
AGCTATCA1259063424.71005903503031No Hit
GTGCCCGT1208235023.712513744891517No Hit
CATATAAC1042116020.45230437271836No Hit
CATATACC1694570.33257201137759473No Hit
GTGCCCGG1134760.2227051202551912No Hit
TCAGGGGG1009280.19807873362751544No Hit
AGCTATCC948760.1862012318845529No Hit
GGGCCCGT841090.16507019069709788No Hit
GCAGGGTG529250.10386926301161475No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)