FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002538833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48948634
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGGGTG1353368727.648753180732278No Hit
AGCTATCA1200465824.525011259762632No Hit
GTGCCCGT1151866623.53215004937625No Hit
CATATAAC990814320.24191931484748No Hit
CATATACC1808150.36939743813892745No Hit
GTGCCCGG1242180.2537721481665862No Hit
TCAGGGGG1092100.22311143555099003No Hit
AGCTATCC1039970.2124614958611511No Hit
GGGCCCGT861880.1760784580832225No Hit
GCAGGGTG651150.133027205621305No Hit
TCCGGGTG542030.11073444868757727No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)