FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002538836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99777895
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATGTG4200736342.100871139845154No Hit
TTTCATGA2723452527.295148890443116No Hit
GAAGGAAC2153988121.58782864681601No Hit
ACGTCCCT66378506.652625814565441No Hit
CGCATGTA1176690.11793093049317187No Hit
CGCCTGTG1021560.10238339864756618No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)