FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002539260

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002539260
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20798246
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC637960.306737404683068No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA354610.17049995465963813No Hit
CTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCCCAAGCAACCCGA262730.12632315244275888No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA231480.11129784694343936No Hit
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA222320.10689362939547883No Hit
CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATC216430.1040616598149671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)