FastQCFastQC Report
Mon 3 Apr 2023
EGAF00002539270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002539270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25068791
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC668240.2665625159186975No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA355120.1416582076096131No Hit
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA325390.12979884031902456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)