FastQCFastQC Report
Wed 19 Apr 2023
EGAF00002539392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002539392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32036662
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC878820.27431696847817666No Hit
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT455270.14210906242354462No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA392590.1225439778963239No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAACGCTTAATCTCGTAT356710.11134430921673426TruSeq Adapter, Index 1 (97% over 36bp)
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA328280.1024701012858331No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)