FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002539395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002539395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22068335
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC420440.1905173181393159No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG372310.16870778878424675Illumina Single End PCR Primer 1 (100% over 50bp)
GAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAG288750.13084358199202614No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA267980.1214319068475261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)