FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002539412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002539412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22259943
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC748980.3364698642759328No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA466400.20952434604167675No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA456590.20511732667060287No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT337760.1517344406497357No Hit
CTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCCCAAGCAACCCGA296150.1330416704121839No Hit
CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATC276420.12417821555068673No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA226270.1016489575018229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)