FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002540142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002540142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48020726
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGGCTC1575758232.81412696676014No Hit
GAGTTAGT1131661923.5661139317219No Hit
TTAAAGCA1050140421.86848237154932No Hit
CGTCCTAG987789420.570063851179594No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)