FastQCFastQC Report
Wed 8 May 2024
EGAF00002540147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002540147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30474765
Total Bases243.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC1207052139.60824964523927No Hit
CATCACTT915253630.033163504296095No Hit
ACAATTCA601912919.75119086234135No Hit
GTGTGGAG28548249.367829415583682No Hit
CATCACTA431110.14146458553494998No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)