FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002540153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002540153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32958917
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCCGA1043846231.67113166976937No Hit
CCAAGATG961569429.174787508946366No Hit
TACGTGAC685448020.79704257272774RNA PCR Primer, Index 17 (100% over 8bp)
GTTTATCT566932617.201190196874492No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)