FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002540154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002540154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32641721
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCCGA1030434531.568019958261388No Hit
CCAAGATG950500529.11919074364982No Hit
TACGTGAC675599620.697425849574536RNA PCR Primer, Index 17 (100% over 8bp)
GTTTATCT558600417.113080526605813No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)