FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002540159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002540159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50216825
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACCGT1552959030.925073419117993No Hit
GCACAATG1227107524.436182494612115No Hit
AAGTTGCA1138032722.66237859522182No Hit
CTTGGTAC1050872520.926701359554293No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)