FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002540160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002540160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50875598
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACCGT1574917130.956237605305397No Hit
GCACAATG1240378924.380625462132162No Hit
AAGTTGCA1152873922.6606456792901No Hit
CTTGGTAC1064427420.922159971466083No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)