FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002540172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002540172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33830292
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATCCG1087041732.132199745719014No Hit
CCTCATTC1049328731.017429586478297ABI Solid3 Adapter A (100% over 8bp)
TAATGGGA595323417.597347371403117No Hit
GTGGCAAT591071717.471670064213455No Hit
TAATGGAA644800.19059841398945065No Hit
AGCATCCA375230.11091538908384238No Hit
CCTCATTA348040.10287821340708499No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)