FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002540178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002540178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29813879
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACAGT748027825.089918691895143No Hit
GGATGCCG744612724.9753713698241No Hit
TATGATTC739065324.78930366625557No Hit
ATGCTGAA701850623.54106958037899No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)