FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002540182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002540182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29813879
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCCATCAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAACAGGGGAG356360.11952822375109257No Hit
GGGAGAAGTGCCCCCACCTGCTCCTCAGTTCCAGCCTGACCCCCTCCCAT321850.10795307782660553No Hit
GTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAACAGGGG305470.1024589923370924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)