FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002540196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002540196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31989469
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATGAC1044340932.646396850163406No Hit
ACTTCATA841989226.320824518844No Hit
TGCCGTGG682675421.34062931772953No Hit
CTAGACCT580837318.157141026629734No Hit
TGCCGTGA426310.13326573191946386No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)