FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002540266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002540266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25814916
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC2142040.8297683401332779TruSeq Adapter, Index 2 (100% over 50bp)
GGGGAGAGCGCGGCGACGGGTCTCGCTCCCTCGGCCCCGGGATTCGGCGA408120.15809464574666832No Hit
GGGGGGAGAGCGCGGCGACGGGTCTCGCTCCCTCGGCCCCGGGATTCGGC307220.11900871573628208No Hit
GGGGTGGGCGCCGGGAGGGGGGAGAGCGCGGCGACGGGTCTCGCTCCCTC276720.10719384095613559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)