FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002542545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002542545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64703541
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGTCGC2017567131.18171075057546No Hit
CCCAATAG1434130122.164630835273762No Hit
TATCGATA1390653821.492700067218887No Hit
GTGTCGCT1117843717.276391411097578No Hit
NGAGTCGC7184481.1103689054668584No Hit
NCCAATAG5112540.7901484093428519No Hit
NATCGATA4989980.7712066330341951No Hit
NTGTCGCT3953470.6110129274068632No Hit
AGAGGCGC3484470.538528486408495No Hit
AGAGCCGC2082250.3218139174175954No Hit
AGAGACGC1905440.29448774681435136No Hit
GTGTCGCG1583370.24471149113771068No Hit
GTGGCGCT1137010.17572608584126795No Hit
GGGTCGCT1030490.15926330832496477No Hit
GTGTCGCC984080.1520905942381113No Hit
TATCGAGA966170.1493225849880457No Hit
CCCAAGAG949960.14681731251771832No Hit
GTGTCGCA945250.14608937708679653No Hit
TATCGAAA862530.13330491448682846No Hit
GATCGATA770960.11915267512175262No Hit
TATCGACA680790.10521680722234351No Hit
CCCAAAAG663810.1025925304458994No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)