FastQCFastQC Report
Wed 8 May 2024
EGAF00002542593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002542593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91760456
Total Bases734 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGGTC2396857526.120810689955594No Hit
AAGATCAT2223095124.227158374191166No Hit
TGATCTCA2054928022.39448330553196No Hit
CCTGAAGG1830093519.944250277047445No Hit
GTCCGGGC5021150.547201945029567No Hit
NTCCGGTC4398570.4793535463686013No Hit
NAGATCAT4086410.44533453495479575No Hit
NGATCTCA3768450.41068344298550563No Hit
TGAGCTCA3747480.4083981448392105No Hit
GGATCTCA3628820.3954666485092445No Hit
NCTGAAGG3417670.37245564690742167No Hit
AAGATCAG3409470.3715620157772538No Hit
GTCCGGCC3342570.3642712935079573No Hit
AAGAGCAT2924600.31872117113280257No Hit
TGAACTCA2169090.23638614001656663No Hit
CCGGAAGG2160470.23544673753582915No Hit
AAGAACAT1610150.1754731907609526No Hit
GGCCGGTC1571450.1712556877441847No Hit
TGATCCCA1491430.1625351556666196No Hit
AAGATCAC1376740.1500363075789423No Hit
AAGATCAA1236660.13477047236992806No Hit
CCCGAAGG1215220.13243395390275742No Hit
GCCCGGTC1183450.1289716781703875No Hit
GTCCGGAC1112790.12127119333408719No Hit
AAGACCAT1090440.11883550360734911No Hit
TGATCGCA1071220.1167409194217605No Hit
TGACCTCA983030.10713002559621107No Hit
CCAGAAGG927270.10105333391106949No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)