Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00002542599 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 89967651 |
Total Bases | 719.7 Mbp |
Sequences flagged as poor quality | 0 |
Sequence length | 8 |
%GC | 53 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGGTACGC | 26680169 | 29.655291322433214 | No Hit |
CCCAGGAT | 25470453 | 28.310679135103793 | No Hit |
TAAGTATG | 16129670 | 17.928299584036044 | No Hit |
GTTCCTCA | 15183876 | 16.87703950389902 | ABI Solid3 Adapter A (100% over 8bp) |
CCCAGGAG | 672946 | 0.7479866291051659 | No Hit |
NGGTACGC | 496381 | 0.5517327555878946 | No Hit |
NCCAGGAT | 471897 | 0.5245185294434329 | No Hit |
GGTCCTCA | 433775 | 0.48214552139412864 | No Hit |
AGGGACGC | 415688 | 0.4620416287183045 | No Hit |
NAAGTATG | 300957 | 0.33451690319223737 | No Hit |
CCCAGGAA | 296238 | 0.3292716845524843 | No Hit |
TAAGGATG | 292159 | 0.3247378327127825 | No Hit |
CCCAGGAC | 268699 | 0.29866179344840293 | No Hit |
NTTCCTCA | 267675 | 0.2975236065683209 | No Hit |
GCTCCTCA | 218042 | 0.24235599971371932 | No Hit |
AGGAACGC | 202032 | 0.22456071460618662 | No Hit |
AGGCACGC | 183820 | 0.20431788310222748 | No Hit |
TAAGTAGG | 145792 | 0.16204935705168072 | No Hit |
GAAGTATG | 134164 | 0.1491247115032491 | No Hit |
GATCCTCA | 123940 | 0.13776062687242996 | No Hit |
GTGCCTCA | 104681 | 0.11635404374401195 | No Hit |
GTTCCGCA | 93565 | 0.10399849163562135 | No Hit |
Adapter Content
Can't analyse adapters as read length is too short (12 vs 0)