FastQCFastQC Report
Wed 8 May 2024
EGAF00002542617

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002542617
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86858035
Total Bases694.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGCTG2396688527.59316970502499No Hit
TCCAATGC2091644824.081189495019085No Hit
GTAGCACA1931130722.233184298954033No Hit
CGTTTGAT1699153019.562415843278057No Hit
AAGCGCGG6204320.7143058209870854No Hit
NAGCGCTG4449870.5123152970246219No Hit
NCCAATGC4002680.46083013505889237No Hit
AAGCGCCG4002600.46082092462718044No Hit
NTAGCACA3606240.41518784071041903No Hit
GCCAATGC3454790.3977513421757699No Hit
NGTTTGAT3136640.3611226065613849No Hit
AAGCGCAG2386670.2747782631739251No Hit
CGGTTGAT2328150.2680408323766477No Hit
GGAGCACA2277650.2622267473584914No Hit
CGTTTGAG1699460.19565950346447514No Hit
GCAGCACA1533810.17658815330095828No Hit
ACCAATGC1158950.13343037290677828No Hit
CGTGTGAT1065020.12261617477300746No Hit
GAAGCACA1051280.12103428312648336No Hit
TCCAAGGC1026560.1181882597274967No Hit
TCCAACGC995890.11465721046993523No Hit
CCCAATGC885290.10192378862819082No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)