FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002542652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002542652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118294248
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACCGT3067961025.934997278988575No Hit
CTTGGTAC2814995523.79655433457762No Hit
AAGTTGCA2626116522.19986638741725No Hit
GCACAATG2534919221.428930339875865No Hit
TGCACCGG6670510.5638913229322866No Hit
NGCACCGT5887460.49769621934618496No Hit
GCACAAGG5634420.4763054920472549No Hit
NTTGGTAC5384550.45518274058430974No Hit
NAGTTGCA5038770.42595224072095206No Hit
NCACAATG4851420.4101146152093549No Hit
GCACAACG3420010.2891104223427668No Hit
GCACAAAG3356950.28377964751084095No Hit
TGCACCGA3133030.2648505783645541No Hit
TGCACCGC2905110.245583369362135No Hit
CGTGGTAC2701010.2283297832029838No Hit
CTTGGGAC2014820.17032273623312605No Hit
CCTGGTAC1887230.15953692017214566No Hit
GGCACCGT1799210.15209615263795412No Hit
AAGGTGCA1529030.12925649605549713No Hit
CTGGGTAC1503160.1270695765359614No Hit
AAGTGGCA1498660.12668916919781256No Hit
AAGTCGCA1201570.10157467673322544No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)