FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002543722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002543722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421045920
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTGTC15988109137.97236439198841No Hit
AGCGAAAG12923221530.693140311156558No Hit
GAAACCCT11672090327.72165634570215No Hit
CCGTGTGA68998661.6387442965840875No Hit
NTTCTGTC10896500.2587960002082433No Hit
NGCGAAAG8831140.20974291830211772No Hit
NAAACCCT7941200.18860650638771181No Hit
GAAACCCG4578550.10874229585219589No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)