FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002543728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002543728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424307157
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC13739402832.38079436873604No Hit
ACCGTATG10020686823.61658679257206No Hit
CTGACTGA9229333021.751537412789858No Hit
GATTAGAT8031761318.929120490890046No Hit
NGACGCCC17569930.41408516708097853No Hit
NCCGTATG12783990.3012909348592487No Hit
NTGACTGA11847330.27921588888023396No Hit
NATTAGAT10272030.2420894823605344No Hit
TGACGCCA6025480.14200750330497017No Hit
TNACGCCC4622040.10893146447680589No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)