FastQCFastQC Report
Sun 14 May 2023
EGAF00002543741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002543741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412539148
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATCA12428592730.12706251092563No Hit
AGTTCGGC9770652123.684181604020765No Hit
TCCGGAAG9655384623.404771757564205No Hit
GTAATCTT8336901320.20875192189033No Hit
NAGCATCA14392320.3488716178761294No Hit
NGTTCGGC11230990.2722405874557146No Hit
NCCGGAAG11134960.2699128083718251No Hit
NTAATCTT9615160.23307266829377368No Hit
GTAATCTA4543530.1101357294702126No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)