FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002543759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002543759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390985981
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGACCT11880576530.38619561144828No Hit
GAGATGAC11871027530.361772740900395No Hit
ACTTCATA7241613218.521413942972035No Hit
TGCCGTGG6993036317.885644600643623No Hit
NTAGACCT13537480.34623952412247744No Hit
NAGATGAC13056790.33394522142726135No Hit
NCTTCATA8380430.21434093310880115No Hit
NGCCGTGG7791110.19926826992807192No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)