FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002543769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002543769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432633684
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGGTC12935733429.89996821421792No Hit
AAGATCAT11111833125.684160783005517No Hit
TGATCTCA9579841122.143077282905228No Hit
CCTGAAGG8453385919.539361387311676No Hit
NTCCGGTC19215430.4441501138408816No Hit
NAGATCAT16582210.3832852275090074No Hit
NGATCTCA14369250.3321343328412681No Hit
NCTGAAGG12683310.293165106395183No Hit
GTCCGGGC4706390.1087846410035886No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)