FastQCFastQC Report
Sat 13 May 2023
EGAF00002543780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002543780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences372818361
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGCCG12817520834.380068528867334No Hit
CCCACAGT9545789425.604397204031482No Hit
TATGATTC8223431222.057473719755986No Hit
ATGCTGAA5546647014.87761221073551No Hit
NGATGCCG13825460.3708363494468557No Hit
NCCACAGT10353210.27770118328480076No Hit
NATGATTC8931880.23957725622853646No Hit
CCCACAGG8221830.2205317886690672No Hit
NTGCTGAA6006680.16111545536245733No Hit
GGATGCGG4499950.12070086859268178No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)