FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002544531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002544531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389750365
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT11878568630.47737646121255No Hit
CCAGGGCA11618062629.808984527827192No Hit
GTGTCATC8854236222.717711117473876No Hit
AATAATGG5569514614.289953519350776No Hit
NGCCTCAT10188750.261417330552083No Hit
NCAGGGCA9636960.24725980692795502No Hit
NTGTCATC7551200.1937445267049333No Hit
TGGCTCAT6443140.16531453408645302No Hit
NATAATGG4837050.12410636228653693No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)